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F

f(double[], double) - Method in class ij.measure.CurveFitter
Returns formula value for parameters 'p' at 'x'
f(int, double[], double) - Static method in class ij.measure.CurveFitter
Returns 'fit' formula value for parameters "p" at "x"
f2hex(float) - Static method in class ij.util.Tools
Converts a float to an 9 byte hex string starting with '#'.
FALSE - Static variable in interface ij.macro.MacroConstants
 
FAST_TRACE - Static variable in class ij.macro.Interpreter
 
FCOLOR - Static variable in class ij.Prefs
 
FERET - Static variable in interface ij.measure.Measurements
 
FERET - Static variable in class ij.measure.ResultsTable
 
FERET_ANGLE - Static variable in class ij.measure.ResultsTable
 
FERET_X - Static variable in class ij.measure.ResultsTable
 
FERET_Y - Static variable in class ij.measure.ResultsTable
 
FFT - Class in ij.plugin
This class implements the FFT, Inverse FFT and Redisplay Power Spectrum commands in the Process/FFT submenu.
FFT() - Constructor for class ij.plugin.FFT
 
FFTCustomFilter - Class in ij.plugin.filter
This class implements the Process/FFT/Custom Filter command.
FFTCustomFilter() - Constructor for class ij.plugin.filter.FFTCustomFilter
 
FFTFilter - Class in ij.plugin.filter
This class implements the Process/FFT/Bandpass Filter command.
FFTFilter() - Constructor for class ij.plugin.filter.FFTFilter
 
FFTMath - Class in ij.plugin
The class implements the Process/FFT/Math command.
FFTMath() - Constructor for class ij.plugin.FFTMath
 
FHT - Class in ij.process
This class contains a Java implementation of the Fast Hartley Transform.
FHT(ImageProcessor) - Constructor for class ij.process.FHT
Constructs a FHT object from an ImageProcessor.
FHT() - Constructor for class ij.process.FHT
 
FILE - Static variable in interface ij.macro.MacroConstants
 
fileChanged() - Method in class ij.plugin.frame.Editor
 
fileFormat - Variable in class ij.io.FileInfo
 
FileInfo - Class in ij.io
This class consists of public fields that describe an image file.
FileInfo() - Constructor for class ij.io.FileInfo
Creates a FileInfo object with all of its fields set to their default value.
FileInfoVirtualStack - Class in ij.plugin
This plugin opens a multi-page TIFF file as a virtual stack.
FileInfoVirtualStack() - Constructor for class ij.plugin.FileInfoVirtualStack
 
FileInfoVirtualStack(FileInfo) - Constructor for class ij.plugin.FileInfoVirtualStack
 
FileInfoVirtualStack(FileInfo, boolean) - Constructor for class ij.plugin.FileInfoVirtualStack
 
fileName - Variable in class ij.io.FileInfo
 
fileName - Static variable in class ij.plugin.FFT
 
FileOpener - Class in ij.io
Opens or reverts an image specified by a FileInfo object.
FileOpener(FileInfo) - Constructor for class ij.io.FileOpener
 
FileSaver - Class in ij.io
Saves images in tiff, gif, jpeg, raw, zip and text format.
FileSaver(ImagePlus) - Constructor for class ij.io.FileSaver
Constructs a FileSaver from an ImagePlus.
fileToClass(String) - Static method in class ij.plugin.frame.jedit.MiscUtilities
Converts a file name to a class name.
fileType - Variable in class ij.io.FileInfo
 
FILL - Static variable in interface ij.macro.MacroConstants
 
fill(ImageProcessor) - Method in class ij.plugin.filter.Filler
Deprecated. replaced by ImageProcessor.fill(Roi)
fill(ImageProcessor) - Method in class ij.process.ByteProcessor
Fills pixels that are within roi and part of the mask.
fill(ImageProcessor) - Method in class ij.process.ColorProcessor
Fills pixels that are within roi and part of the mask.
fill() - Method in class ij.process.ColorProcessor
Fills the current rectangular ROI.
fill() - Method in class ij.process.FloatProcessor
Fills the current rectangular ROI.
fill(ImageProcessor) - Method in class ij.process.FloatProcessor
Fills pixels that are within roi and part of the mask.
fill(int, int) - Method in class ij.process.FloodFiller
Does a 4-connected flood fill using the current fill/draw value, which is defined by ImageProcessor.setValue().
fill() - Method in class ij.process.ImageProcessor
Fills the image or ROI bounding rectangle with the current fill/draw value.
fill(ImageProcessor) - Method in class ij.process.ImageProcessor
Fills pixels that are within the ROI bounding rectangle and part of the mask (i.e. pixels that have a value=BLACK in the mask array).
fill(Roi) - Method in class ij.process.ImageProcessor
Fills the ROI with the current fill/draw value.
fill(ImageProcessor, Rectangle) - Method in class ij.process.PolygonFiller
Fills the polygon using the ImageProcessor's current drawing color.
fill() - Method in class ij.process.ShortProcessor
Fills the current rectangular ROI.
fill(ImageProcessor) - Method in class ij.process.ShortProcessor
Fills pixels that are within roi and part of the mask.
fill8(int, int) - Method in class ij.process.FloodFiller
Does a 8-connected flood fill using the current fill/draw value, which is defined by ImageProcessor.setValue().
FILL_BLACK - Static variable in class ij.gui.NewImage
 
FILL_COLOR - Static variable in class ij.io.RoiDecoder
 
FILL_OVAL - Static variable in interface ij.macro.MacroConstants
 
FILL_RAMP - Static variable in class ij.gui.NewImage
 
FILL_RECT - Static variable in interface ij.macro.MacroConstants
 
FILL_WHITE - Static variable in class ij.gui.NewImage
 
fillButton - Variable in class ij2x.plugin.ControlBarPanel
 
fillColor - Variable in class ij.gui.Roi
 
FILLED - Static variable in class ij.gui.Arrow
 
Filler - Class in ij.plugin.filter
This plugin implements ImageJ's Fill, Clear, Clear Outside and Draw commands.
Filler() - Constructor for class ij.plugin.filter.Filler
 
fillOutside(Roi) - Method in class ij.process.ImageProcessor
Fills outside an Roi.
fillOval(int, int, int, int) - Method in class ij.process.ImageProcessor
Fills an elliptical shape.
fillPolygon(Polygon) - Method in class ij.process.ImageProcessor
Fills a polygon.
fillTexture(Graphics2D, Image, int, int, int, int) - Method in class ij2x.plugin.imageborder.ImageBorder
 
filter(int) - Method in class ij.process.ByteProcessor
Filters using a 3x3 neighborhood.
filter(int) - Method in class ij.process.ColorProcessor
3x3 unweighted smoothing.
filter(int) - Method in class ij.process.FloatProcessor
Filters using a 3x3 neighborhood.
filter(int) - Method in class ij.process.ImageProcessor
A 3x3 filter operation, where the argument (BLUR_MORE, FIND_EDGES, MEDIAN_FILTER, MIN or MAX) determines the filter type.
filter(int) - Method in class ij.process.ShortProcessor
Filters using a 3x3 neighborhood.
FILTER - Static variable in class ij.Undo
 
filterRGB(int, double) - Method in class ij.process.ColorProcessor
Performs the specified filter on the red, green and blue planes of this image.
Filters - Class in ij.plugin.filter
This plugin implements the Invert, Smooth, Sharpen, Find Edges, and Add Noise commands.
Filters() - Constructor for class ij.plugin.filter.Filters
 
FILTERS_MENU - Static variable in class ij.Menus
 
FINAL_PROCESSING - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the setup method of the filter should be called again after the calls to the run(ip) have finished.
FIND_EDGES - Static variable in class ij.process.ImageProcessor
 
findAction - Static variable in class ij.plugin.frame.Editor
 
findAction - Static variable in class ij2x.plugin.frame.Editor
 
findAction - Static variable in class ij2x.plugin.frame.MonoEditor
 
findAllMenuItems() - Method in class ij.plugin.CommandFinder
 
findCaretPos() - Method in class ij.plugin.frame.Editor
 
findEdges() - Method in class ij.process.ColorProcessor
 
findEdges() - Method in class ij.process.ImageProcessor
Finds edges in the image or ROI using a Sobel operator.
findFunctionAction - Static variable in class ij2x.plugin.frame.Editor
 
findMatchingBracket(Document, int) - Static method in class ij.plugin.frame.jedit.TextUtilities
Returns the offset of the bracket matching the one at the specified offset of the document, or -1 if the bracket is unmatched (or if the character is not a bracket).
findMaxima(ImageProcessor, double, double, int, boolean, boolean) - Method in class ij.plugin.filter.MaximumFinder
Here the processing is done: Find the maxima of an image (does not find minima).
findMinAndMax() - Method in class ij.process.FloatProcessor
Calculates the minimum and maximum pixel value for the entire image.
findMinAndMax() - Method in class ij.process.ShortProcessor
 
findnextAction - Static variable in class ij.plugin.frame.Editor
 
findnextAction - Static variable in class ij2x.plugin.frame.Editor
 
findnextAction - Static variable in class ij2x.plugin.frame.MonoEditor
 
findNthLowestNumber(float[], int, int) - Static method in class ij.plugin.filter.RankFilters
Find the n-th lowest number in part of an array
findWordEnd(String, int, String) - Static method in class ij.plugin.frame.jedit.TextUtilities
Locates the end of the word at the specified position.
findWordStart(String, int, String) - Static method in class ij.plugin.frame.jedit.TextUtilities
Locates the start of the word at the specified position.
fireCaretEvent() - Method in class ij.plugin.frame.jedit.JEditTextArea
 
fireChangeListeners() - Method in class com.bric.swing.ColorPickerPanel
 
fireInsertUpdate(DocumentEvent) - Method in class ij.plugin.frame.jedit.SyntaxDocument
We overwrite this method to update the token marker state immediately so that any event listeners get a consistent token marker.
fireRemoveUpdate(DocumentEvent) - Method in class ij.plugin.frame.jedit.SyntaxDocument
We overwrite this method to update the token marker state immediately so that any event listeners get a consistent token marker.
firstLine - Variable in class ij.plugin.frame.jedit.JEditTextArea
 
firstToken - Variable in class ij.plugin.frame.jedit.syntax.DefaultTokenHandler
 
firstToken - Variable in class ij.plugin.frame.jedit.tokenmarker.TokenMarker
The first token in the list.
FIT - Static variable in interface ij.macro.MacroConstants
 
fit(ImageProcessor, ImageStatistics) - Method in class ij.process.EllipseFitter
Fits an ellipse to the current ROI.
fitList - Static variable in class ij.measure.CurveFitter
 
FITS - Static variable in class ij.io.FileInfo
 
FITS - Static variable in class ij.io.Opener
 
FITS_Reader - Class in ij.plugin
Opens and displays FITS images.
FITS_Reader() - Constructor for class ij.plugin.FITS_Reader
 
FITS_Writer - Class in ij.plugin
This plugin saves a 16 or 32 bit image in FITS format.
FITS_Writer() - Constructor for class ij.plugin.FITS_Writer
 
fitSpline(int) - Method in class ij.gui.PolygonRoi
 
fitSpline() - Method in class ij.gui.PolygonRoi
 
fitSplineForStraightening() - Method in class ij.gui.PolygonRoi
 
Fitter - Class in ij.plugin.frame
ImageJ plugin that does curve fitting using the modified CurveFitter class.
Fitter() - Constructor for class ij.plugin.frame.Fitter
 
fitToWindow() - Method in class ij.gui.ImageCanvas
 
fixNewLines(String) - Static method in class ij.util.Tools
Converts carriage returns to line feeds.
flag - Variable in class ij2x.plugin.AlignRGB
 
flags - Variable in class ij.gui.ImageCanvas
 
flatten() - Method in class ij.ImagePlus
Returns a "flattened" version of this image, in RGB format.
flipflop - Variable in class ij2x.plugin.MovieControllerPanel
 
flipflop - Variable in class ij2x.plugin.StackControlPanel
 
flipflop - Variable in class ij2x.plugin.TransformPanel
 
flipHorizontal() - Method in class ij.process.ImageProcessor
Flips the image or ROI horizontally.
flipHorizontal() - Method in class ij.process.StackProcessor
 
flipHorizontalButton - Variable in class ij2x.plugin.TransformPanel
 
flipStack(ImagePlus) - Method in class ij.plugin.StackReverser
 
flipVertical() - Method in class ij.process.ByteProcessor
 
flipVertical() - Method in class ij.process.ColorProcessor
 
flipVertical() - Method in class ij.process.FloatProcessor
 
flipVertical() - Method in class ij.process.ImageProcessor
Flips the image or ROI vertically.
flipVertical() - Method in class ij.process.ShortProcessor
 
flipVertical() - Method in class ij.process.StackProcessor
 
flipVerticalButton - Variable in class ij2x.plugin.TransformPanel
 
flipXZ - Static variable in class ij.Prefs
Rotate XZ orthogonal views 180 degrees
fList - Static variable in class ij.measure.CurveFitter
 
FLOAT - Static variable in class ij.plugin.filter.EDM
Output type: new 32-bit image
FloatBlitter - Class in ij.process
This class does bit blitting of 32-bit floating-point images.
FloatBlitter(FloatProcessor) - Constructor for class ij.process.FloatBlitter
Constructs a FloatBlitter from a FloatProcessor.
FloatPolygon - Class in ij.process
Used by the Roi classes to return float coordinate arrays and to determine if a point is inside or outside of spline fitted selections.
FloatPolygon() - Constructor for class ij.process.FloatPolygon
Constructs an empty FloatPolygon.
FloatPolygon(float[], float[], int) - Constructor for class ij.process.FloatPolygon
Constructs a FloatPolygon from x and y arrays.
FloatProcessor - Class in ij.process
This is an 32-bit floating-point image and methods that operate on that image.
FloatProcessor(int, int, float[], ColorModel) - Constructor for class ij.process.FloatProcessor
Creates a new FloatProcessor using the specified pixel array and ColorModel.
FloatProcessor(int, int) - Constructor for class ij.process.FloatProcessor
Creates a blank FloatProcessor using the default grayscale LUT that displays zero as black.
FloatProcessor(int, int, int[]) - Constructor for class ij.process.FloatProcessor
Creates a FloatProcessor from an int array using the default grayscale LUT.
FloatProcessor(int, int, double[]) - Constructor for class ij.process.FloatProcessor
Creates a FloatProcessor from a double array using the default grayscale LUT.
FloatProcessor(float[][]) - Constructor for class ij.process.FloatProcessor
Creates a FloatProcessor from a 2D float array using the default LUT.
FloatProcessor(int[][]) - Constructor for class ij.process.FloatProcessor
Creates a FloatProcessor from a 2D int array.
FloatStatistics - Class in ij.process
32-bit (float) image statistics, including histogram.
FloatStatistics(ImageProcessor) - Constructor for class ij.process.FloatStatistics
Constructs an ImageStatistics object from a FloatProcessor using the standard measurement options (area, mean, mode, min and max).
FloatStatistics(ImageProcessor, int, Calibration) - Constructor for class ij.process.FloatStatistics
Constructs a FloatStatistics object from a FloatProcessor using the specified measurement options.
FLOOD_FILL - Static variable in interface ij.macro.MacroConstants
 
floodFill - Variable in class ij.plugin.filter.ParticleAnalyzer
 
FloodFiller - Class in ij.process
This class, which does flood filling, is used by the floodFill() macro function and by the particle analyzer The Wikipedia at "http://en.wikipedia.org/wiki/Flood_fill" has a good description of the algorithm used here as well as examples in C and Java.
FloodFiller(ImageProcessor) - Constructor for class ij.process.FloodFiller
 
FLOOR - Static variable in interface ij.macro.MacroConstants
 
flush() - Method in class ij.ImagePlus
Sets the ImageProcessor, Roi, AWT Image and stack image arrays to null.
flushStream() - Static method in class ij.util.Log
Flushes the log stream.
fm - Variable in class ij.plugin.frame.jedit.LNTextAreaPainter
 
fm - Variable in class ij.plugin.frame.jedit.TextAreaPainter
 
fmImage - Variable in class ij.process.ImageProcessor
 
focusedComponent - Static variable in class ij.plugin.frame.Editor
 
focusedComponent - Static variable in class ij.plugin.frame.jedit.JEditTextArea
 
focusGained(FocusEvent) - Method in class ij.gui.GenericDialog
 
focusGained(FocusEvent) - Method in class ij.gui.ImageWindow
 
focusGained(FocusEvent) - Method in class ij.plugin.frame.ColorThresholder
 
focusGained(FocusEvent) - Method in class ij.plugin.frame.PlugInFrame
 
focusGained(FocusEvent) - Method in class ij.plugin.Orthogonal_Views
 
focusGained(FocusEvent) - Method in class ij.plugin.Scaler
 
focusGained(FocusEvent) - Method in class ij.text.TextWindow
 
focusGained(FocusEvent) - Method in class ij2x.plugin.ScaleAll
 
focusGained(FocusEvent) - Method in class ij2x.plugin.Translator
 
focusLost(FocusEvent) - Method in class ij.gui.GenericDialog
 
focusLost(FocusEvent) - Method in class ij.gui.ImageWindow
 
focusLost(FocusEvent) - Method in class ij.plugin.frame.ColorThresholder
 
focusLost(FocusEvent) - Method in class ij.plugin.frame.PlugInFrame
 
focusLost(FocusEvent) - Method in class ij.plugin.Orthogonal_Views
 
focusLost(FocusEvent) - Method in class ij.plugin.Scaler
 
focusLost(FocusEvent) - Method in class ij.text.TextWindow
 
focusLost(FocusEvent) - Method in class ij2x.plugin.ScaleAll
 
focusLost(FocusEvent) - Method in class ij2x.plugin.Translator
 
FolderOpener - Class in ij.plugin
Implements the File/Import/Image Sequence command, which opens a folder of images as a stack.
FolderOpener() - Constructor for class ij.plugin.FolderOpener
 
font - Variable in class ij.process.ImageProcessor
 
fontMetrics - Variable in class ij.process.ImageProcessor
 
Fonts - Class in ij.plugin.frame
Displays a window that allows the user to set the font, size and style.
Fonts() - Constructor for class ij.plugin.frame.Fonts
 
FOR - Static variable in interface ij.macro.MacroConstants
 
FOREGROUND_COLOR_CHANGED - Static variable in interface ij.IJEventListener
 
formatFileSize(long) - Static method in class ij.plugin.frame.jedit.MiscUtilities
Formats the given file size into a nice string (123 bytes, 10.6 KB, 1.2 MB).
FOUR_CONNECTED - Static variable in class ij.gui.Wand
Wand operation type: trace outline of 4-connected pixels
FOUR_CONNECTED - Static variable in class ij.plugin.filter.ParticleAnalyzer
Use 4-connected particle tracing.
fps - Variable in class ij.measure.Calibration
Frame rate in frames per second
FPS - Static variable in class ij.Prefs
 
FractalBoxCounter - Class in ij.plugin.filter
Calculate the so-called "capacity" fractal dimension.
FractalBoxCounter() - Constructor for class ij.plugin.filter.FractalBoxCounter
 
frame - Variable in class ij.gui.HistogramWindow
 
FRAME - Static variable in class ij.measure.ResultsTable
 
frameInterval - Variable in class ij.io.FileInfo
 
frameInterval - Variable in class ij.measure.Calibration
Frame interval in 'timeUnit's
frameLocation - Variable in class ij2x.plugin.frame.InteractiveTestCase
 
frameLocation - Variable in class ij2x.plugin.frame.JXCollapsiblePaneVisualCheck
 
FreehandRoi - Class in ij.gui
Freehand region of interest or freehand line of interest
FreehandRoi(int, int, ImagePlus) - Constructor for class ij.gui.FreehandRoi
 
FREELINE - Static variable in class ij.gui.Roi
 
FREELINE - Static variable in class ij.gui.Toolbar
 
freeMemory() - Static method in class ij.IJ
Runs the garbage collector and returns a string something like "64K of 256MB (25%)" that shows how much of the available memory is in use.
FREEROI - Static variable in class ij.gui.Roi
 
FREEROI - Static variable in class ij.gui.Toolbar
 
FROM_CHAR_CODE - Static variable in interface ij.macro.MacroConstants
 
FUNCTION - Static variable in interface ij.macro.MacroConstants
 
FUNCTION - Static variable in class ij.plugin.frame.jedit.syntax.Token
 
FunctionFinder - Class in ij.macro
This class implements the text editor's Macros/Find Functions command.
FunctionFinder() - Constructor for class ij.macro.FunctionFinder
 
functionIDs - Static variable in interface ij.macro.MacroConstants
 
Functions - Class in ij.macro
This class implements the built-in macro functions.
functions - Static variable in interface ij.macro.MacroConstants
 
fwdButton - Variable in class ij2x.plugin.MovieControllerPanel
 
fwdButton - Variable in class ij2x.plugin.StackControlPanel
 
fwdButton - Variable in class ij2x.plugin.TransformPanel
 

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