A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

R

r - Variable in class ij2x.plugin.AlignRGB
 
rand(int, int) - Method in class ij.plugin.filter.SaltAndPepper
 
RANDOM - Static variable in interface ij.macro.MacroConstants
 
RandomAccessStream - Class in ij.io
This is a class that uses a memory cache to allow seeking within an InputStream.
RandomAccessStream(InputStream) - Constructor for class ij.io.RandomAccessStream
Constructs a RandomAccessStream from an InputStream.
RandomAccessStream(RandomAccessFile) - Constructor for class ij.io.RandomAccessStream
Constructs a RandomAccessStream from an RandomAccessFile.
rank(ImageProcessor, double, int) - Method in class ij.plugin.filter.RankFilters
Filters an image by any method except 'despecle' or 'remove outliers'.
rank(ImageProcessor, double, int, int, float) - Method in class ij.plugin.filter.RankFilters
Filters an image by any method except 'despecle' (for 'despeckle', use 'median' and radius=1)
RankFilters - Class in ij.plugin.filter
This plugin implements the Mean, Minimum, Maximum, Variance, Median, Open Maxima, Close Maxima, Remove Outliers, Remove NaNs and Despeckle commands.
RankFilters() - Constructor for class ij.plugin.filter.RankFilters
 
raster - Variable in class ij.process.ImageProcessor
 
RAW - Static variable in class ij.io.FileInfo
 
Raw - Class in ij.plugin
This plugin implements the File/Import/Raw command.
Raw() - Constructor for class ij.plugin.Raw
 
RAW_INTEGRATED_DENSITY - Static variable in class ij.measure.ResultsTable
 
rc2DFHT(float[], boolean, int) - Method in class ij.process.FHT
Performs a 2D FHT (Fast Hartley Transform).
RE - Class in gnu.regexp
RE provides the user interface for compiling and matching regular expressions.
RE(Object) - Constructor for class gnu.regexp.RE
Constructs a regular expression pattern buffer without any compilation flags set, and using the default syntax (RESyntax.RE_SYNTAX_PERL5).
RE(Object, int) - Constructor for class gnu.regexp.RE
Constructs a regular expression pattern buffer using the specified compilation flags and the default syntax (RESyntax.RE_SYNTAX_PERL5).
RE(Object, int, RESyntax) - Constructor for class gnu.regexp.RE
Constructs a regular expression pattern buffer using the specified compilation flags and regular expression syntax.
RE() - Constructor for class gnu.regexp.RE
 
RE_BACKSLASH_ESCAPE_IN_LISTS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_BK_PLUS_QM - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_CHAR_CLASS_ESC_IN_LISTS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_CHAR_CLASS_ESCAPES - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_CHAR_CLASSES - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_COMMENTS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_CONTEXT_INDEP_ANCHORS - Static variable in class gnu.regexp.RESyntax
Syntax bit. ^ and $ are special everywhere.
RE_CONTEXT_INDEP_OPS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_CONTEXT_INVALID_OPS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_DOT_NEWLINE - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_DOT_NOT_NULL - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_HAT_LISTS_NOT_NEWLINE - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_INTERVALS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_LIMITED_OPS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_LOOKAHEAD - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_NEWLINE_ALT - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_NO_BK_BRACES - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_NO_BK_PARENS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_NO_BK_REFS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_NO_BK_VBAR - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_NO_EMPTY_RANGES - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_PURE_GROUPING - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_STINGY_OPS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_STRING_ANCHORS - Static variable in class gnu.regexp.RESyntax
Syntax bit.
RE_SYNTAX_AWK - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_ED - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_EGREP - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_EMACS - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_GREP - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_JAVA_1_4 - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_JEDIT - Static variable in class ij.plugin.frame.jedit.syntax.ParserRule
Perl5 syntax with character classes enabled.
RE_SYNTAX_PERL4 - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_PERL4_S - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_PERL5 - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_PERL5_S - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_POSIX_AWK - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_POSIX_BASIC - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_POSIX_EGREP - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_POSIX_EXTENDED - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_POSIX_MINIMAL_BASIC - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_POSIX_MINIMAL_EXTENDED - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_SYNTAX_SED - Static variable in class gnu.regexp.RESyntax
Predefined syntax.
RE_UNMATCHED_RIGHT_PAREN_ORD - Static variable in class gnu.regexp.RESyntax
Syntax bit.
read() - Method in class gnu.regexp.REFilterInputStream
Deprecated. Reads the next byte from the stream per the general contract of InputStream.read().
read(byte[], int, int) - Method in class gnu.regexp.REFilterInputStream
Deprecated. Reads from the stream into the provided array.
read(byte[]) - Method in class gnu.regexp.REFilterInputStream
Deprecated. Reads from the stream into the provided array.
read() - Method in class gnu.regexp.REFilterReader
Reads the next character from the stream per the general contract of Reader.read().
read(char[], int, int) - Method in class gnu.regexp.REFilterReader
Reads from the stream into the provided array.
read(char[]) - Method in class gnu.regexp.REFilterReader
Reads from the stream into the provided array.
read() - Method in class ij.io.RandomAccessStream
 
read(byte[], int, int) - Method in class ij.io.RandomAccessStream
 
readDouble() - Method in class ij.io.RandomAccessStream
 
readFloat() - Method in class ij.io.RandomAccessStream
 
readFully(byte[]) - Method in class ij.io.RandomAccessStream
 
readFully(byte[], int) - Method in class ij.io.RandomAccessStream
 
readInt() - Method in class ij.io.RandomAccessStream
 
readLock() - Method in class ij.util.ReadWriteLock
 
readLong() - Method in class ij.io.RandomAccessStream
 
readLutButton - Variable in class ij2x.plugin.LutPanel
 
readPixels(InputStream) - Method in class ij.io.ImageReader
Reads the image from the InputStream and returns the pixel array (byte, short, int or float).
readPixels(InputStream, long) - Method in class ij.io.ImageReader
Skips the specified number of bytes, then reads an image and returns the pixel array (byte, short, int or float).
readPixels(String) - Method in class ij.io.ImageReader
Reads the image from a URL and returns the pixel array (byte, short, int or float).
readShort() - Method in class ij.io.RandomAccessStream
 
readUnlock() - Method in class ij.util.ReadWriteLock
 
ReadWriteLock - Class in ij.util
Implements consumer/producer locking scemantics.
ReadWriteLock() - Constructor for class ij.util.ReadWriteLock
 
recalculateVisibleLines() - Method in class ij.plugin.frame.jedit.JEditTextArea
Recalculates the number of visible lines.
RecentOpener - Class in ij
Opens, in a separate thread, files selected from the File/Open Recent submenu.
RecentOpener(String) - Constructor for class ij.RecentOpener
 
record - Static variable in class ij.plugin.frame.Recorder
This variable is true if the recorder is running.
record(String) - Static method in class ij.plugin.frame.Recorder
 
record(String, String) - Static method in class ij.plugin.frame.Recorder
 
record(String, String, String) - Static method in class ij.plugin.frame.Recorder
 
record(String, String, String, String) - Static method in class ij.plugin.frame.Recorder
 
record(String, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, int, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, double, double) - Static method in class ij.plugin.frame.Recorder
 
record(String, int, int, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, String, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, String, int, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, int, int, int, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, int, int, int, int, int) - Static method in class ij.plugin.frame.Recorder
 
record(String, int, int, int, int, double) - Static method in class ij.plugin.frame.Recorder
 
record(String, String, String, int, int, int, int, int) - Static method in class ij.plugin.frame.Recorder
 
RECORD_STARTS - Static variable in class ij.plugin.filter.ParticleAnalyzer
Record starting coordinates so outline can be recreated later using doWand(x,y).
recordCall(String) - Static method in class ij.plugin.frame.Recorder
 
recorder - Variable in class ij.plugin.frame.jedit.InputHandler
 
Recorder - Class in ij.plugin.frame
This is ImageJ's macro recorder.
Recorder() - Constructor for class ij.plugin.frame.Recorder
 
recordInMacros - Static variable in class ij.plugin.frame.Recorder
Set this variable true to allow recording within IJ.run() calls.
recordOption(String, String) - Static method in class ij.plugin.frame.Recorder
 
recordOption(String) - Static method in class ij.plugin.frame.Recorder
 
recordPath(String, String) - Static method in class ij.plugin.frame.Recorder
 
recordRoi(Polygon, int) - Static method in class ij.plugin.frame.Recorder
 
recordScriptRoi(Polygon, int) - Static method in class ij.plugin.frame.Recorder
 
recordSetFont() - Static method in class ij.gui.TextRoi
 
recordStarts - Variable in class ij.plugin.filter.ParticleAnalyzer
 
recordString(String) - Static method in class ij.plugin.frame.Recorder
 
RECT - Static variable in interface ij.measure.Measurements
 
RECTANGLE - Static variable in class ij.gui.Roi
 
RECTANGLE - Static variable in class ij.gui.Toolbar
 
rectSelect - Variable in class ij.plugin.frame.jedit.JEditTextArea
 
RectToolOptions - Class in ij.plugin
This plugin implements the rounded rectangle tool dialog box.
RectToolOptions(String) - Constructor for class ij.plugin.RectToolOptions
 
RectToolOptions() - Constructor for class ij.plugin.RectToolOptions
 
RED - Static variable in class com.bric.swing.ColorPicker
Used to indicate when we're in "red mode".
red - Variable in class ij.plugin.filter.RGBStackSplitter
These are the three stacks created by the split(ImageStack) method.
RED - Static variable in class ij2x.plugin.frame.JColorPicker
Used to indicate when we're in "red mode".
RED_LUT - Static variable in class ij.process.ImageProcessor
 
redCheckbox - Variable in class ij2x.plugin.AlignRGB
 
redirectErrorMessages() - Static method in class ij.IJ
Causes IJ.error() output to be temporarily redirected to the "Log" window.
redirectErrorMessages(boolean) - Static method in class ij.IJ
Set 'true' and IJ.error() output will be redirected to the "Log" window.
redirectingErrorMessages() - Static method in class ij.IJ
Returns the state of the 'redirectErrorMessages' flag.
redLutButton - Variable in class ij2x.plugin.LutPanel
 
reds - Variable in class ij.io.FileInfo
 
reduce(ImagePlus) - Method in class ij.plugin.HyperStackReducer
 
reduceHyperstack(ImagePlus, int, boolean) - Method in class ij.plugin.StackReducer
 
reduceStack(ImagePlus, int) - Method in class ij.plugin.StackReducer
 
REException - Exception in gnu.regexp
This is the regular expression exception class.
REFilterInputStream - Class in gnu.regexp
Deprecated. This class cannot properly handle all character encodings. For proper handling, use the REFilterReader class instead.
REFilterInputStream(InputStream, RE, String) - Constructor for class gnu.regexp.REFilterInputStream
Deprecated. Creates an REFilterInputStream.
REFilterReader - Class in gnu.regexp
Replaces instances of a given RE with replacement text.
REFilterReader(Reader, RE, String) - Constructor for class gnu.regexp.REFilterReader
Creates an REFilterReader.
reflexAngle - Static variable in class ij.Prefs
Angle tool measures reflex angle
refresh() - Method in class ij.plugin.frame.ColorPicker
 
REG_ANCHORINDEX - Static variable in class gnu.regexp.RE
Execution flag.
REG_BADBR - Static variable in exception gnu.regexp.REException
Error flag.
REG_BADPAT - Static variable in exception gnu.regexp.REException
Error flag.
REG_BADRPT - Static variable in exception gnu.regexp.REException
Error flag.
REG_DOT_NEWLINE - Static variable in class gnu.regexp.RE
Compilation flag.
REG_EBRACE - Static variable in exception gnu.regexp.REException
Error flag.
REG_EBRACK - Static variable in exception gnu.regexp.REException
Error flag.
REG_ECTYPE - Static variable in exception gnu.regexp.REException
Error flag.
REG_EEND - Static variable in exception gnu.regexp.REException
Error flag.
REG_EPAREN - Static variable in exception gnu.regexp.REException
Error flag.
REG_ERANGE - Static variable in exception gnu.regexp.REException
Error flag.
REG_ESCAPE - Static variable in exception gnu.regexp.REException
Error flag.
REG_ESIZE - Static variable in exception gnu.regexp.REException
Error flag.
REG_ESPACE - Static variable in exception gnu.regexp.REException
Error flag.
REG_ESUBREG - Static variable in exception gnu.regexp.REException
Error flag.
REG_ICASE - Static variable in class gnu.regexp.RE
Compilation flag.
REG_MULTILINE - Static variable in class gnu.regexp.RE
Compilation flag.
REG_NO_INTERPOLATE - Static variable in class gnu.regexp.RE
Execution flag.
REG_NOTBOL - Static variable in class gnu.regexp.RE
Execution flag.
REG_NOTEOL - Static variable in class gnu.regexp.RE
Execution flag.
REGEXP - Static variable in class ij.plugin.frame.jedit.syntax.ParserRule
 
regionMatches(boolean, Segment, int, char[]) - Static method in class ij.plugin.frame.jedit.syntax.SyntaxUtilities
Checks if a subregion of a Segment is equal to a character array.
regionMatches(boolean, Segment, int, String) - Static method in class ij.plugin.frame.jedit.SyntaxUtilities
Checks if a subregion of a Segment is equal to a string.
regionMatches(boolean, Segment, int, char[]) - Static method in class ij.plugin.frame.jedit.SyntaxUtilities
Checks if a subregion of a Segment is equal to a character array.
register(Class) - Static method in class ij.IJ
Adds the specified class to a Vector to keep it from being garbage collected, which would cause the classes static fields to be reset.
register(Class) - Method in class ij.ImageJ
Adds the specified class to a Vector to keep it from being garbage collected, causing static fields to be reset.
registerExtensions(MacroExtension) - Static method in class ij.macro.Functions
 
relCenter(ImageJ, Window) - Static method in class ij.gui.GUI
Positions the specified window in the center of the screen.
reloadModes() - Static method in class ij.plugin.frame.Editor
Reloads all edit modes.
relRight(ImageJ, Window) - Static method in class ij.gui.GUI
Positions the specified window in the center of the screen.
REMatch - Class in gnu.regexp
An instance of this class represents a match completed by a gnu.regexp matching function.
REMatchEnumeration - Class in gnu.regexp
An REMatchEnumeration enumerates regular expression matches over a given input text.
remove(int) - Method in class ij.gui.Overlay
Removes the Roi with the specified index from this Overlay.
remove(Roi) - Method in class ij.gui.Overlay
Removes the specified Roi from this Overlay.
REMOVE_NAN - Static variable in class ij.plugin.filter.RankFilters
 
removeAdjustmentListener(AdjustmentListener) - Method in class ij.gui.ScrollbarWithLabel
 
removeAllKeyBindings() - Method in class ij.plugin.frame.jedit.DefaultInputHandler
Removes all key bindings from this input handler.
removeAllKeyBindings() - Method in class ij.plugin.frame.jedit.InputHandler
Removes all key bindings from this input handler.
removeBatchModeImage(ImagePlus) - Static method in class ij.macro.Interpreter
 
removeCaretListener(CaretListener) - Method in class ij.plugin.frame.jedit.JEditTextArea
Removes a caret change listener from this text area.
removeChangeListener(ChangeListener) - Method in class com.bric.swing.ColorPickerPanel
Remove a ChangeListener so it is no longer notified when the selected color changes.
removeCommandListener(CommandListener) - Static method in class ij.Executer
Removes the specified command listener.
removeEventListener(IJEventListener) - Static method in class ij.IJ
 
removeFromBus(EBComponent) - Static method in class ij.plugin.frame.jedit.EditBus
Removes a component from the bus.
removeImageListener(ImageListener) - Static method in class ij.ImagePlus
 
removeKeyBinding(String) - Method in class ij.plugin.frame.jedit.DefaultInputHandler
Removes a key binding from this input handler.
removeKeyBinding(String) - Method in class ij.plugin.frame.jedit.InputHandler
Removes a key binding from this input handler.
removeKeyListener(KeyListener) - Method in class ij.gui.ScrollbarWithLabel
 
removeLayoutComponent(Component) - Method in class ij.gui.ImageLayout
Not used by this class.
removeNotify() - Method in class ij.plugin.frame.jedit.JEditTextArea
Called by the AWT when this component is removed from it's parent.
removeProgressListener(WorkThreadProgressListener) - Method in class ij.util.WorkThreadPool
Removes a progress listener from this thread pool.
removePropertyChangeListener(PropertyChangeListener) - Method in class ij.plugin.AboutBox
 
removePropertyChangeListener(PropertyChangeListener) - Method in class ij.plugin.AboutBox1
 
removePropertyChangeListener(PropertyChangeListener) - Method in class ij2x.plugin.ColorIcon
 
removeSliceButton - Variable in class ij2x.plugin.StackControlPanel
 
removeSlicesButton - Variable in class ij2x.plugin.StackControlPanel
 
removeSplineFit() - Method in class ij.gui.PolygonRoi
 
removeUpdate(DocumentEvent) - Method in class ij.gui.ColorChooser
 
removeUpdate(DocumentEvent) - Method in class ij.gui.GenericDialog
 
removeUpdate(DocumentEvent) - Method in class ij.macro.FunctionFinder
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.ArrowToolOptions
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.Distribution
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.Duplicator
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.filter.ImageProperties
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.frame.Editor
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.frame.LineWidthAdjuster
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.Histogram
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.RectToolOptions
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.Resizer
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.Scaler
 
removeUpdate(DocumentEvent) - Method in class ij.plugin.Slicer
 
removeUpdate(DocumentEvent) - Method in class ij2x.gui.ColorChooser
 
removeUpdate(DocumentEvent) - Method in class ij2x.gui.JColorChooser
 
removeUpdate(DocumentEvent) - Method in class ij2x.plugin.AlignRGB
 
removeUpdate(DocumentEvent) - Method in class ij2x.plugin.frame.Editor
 
removeUpdate(DocumentEvent) - Method in class ij2x.plugin.frame.MonoEditor
 
removeUpdate(DocumentEvent) - Method in class ij2x.plugin.RoiRotator
 
removeUpdate(DocumentEvent) - Method in class ij2x.plugin.ScaleAll
 
removeUpdate(DocumentEvent) - Method in class ij2x.plugin.Translator
 
removeWindow(JFrame) - Static method in class ij.WindowManager
Removes the specified window from the Window menu.
RENAME - Static variable in interface ij.macro.MacroConstants
 
rename(String) - Method in class ij.text.TextWindow
 
renameResults(String) - Static method in class ij.IJ
Renames a results window.
repaintImageWindows() - Static method in class ij.WindowManager
Repaints all open image windows.
repaintWindow() - Method in class ij.ImagePlus
Calls draw to draw the image and also repaints the image window to force the information displayed above the image (dimension, type, size) to be updated.
REPEAT - Static variable in class ij.plugin.frame.jedit.InputHandler
 
repeat - Variable in class ij.plugin.frame.jedit.InputHandler
 
repeatCount - Variable in class ij.plugin.frame.jedit.InputHandler
 
REPLACE - Static variable in interface ij.macro.MacroConstants
 
requireControlKey - Static variable in class ij.Prefs
Require control or command key for keybaord shortcuts.
REQUIRES - Static variable in interface ij.macro.MacroConstants
 
reset() - Method in class ij.CompositeImage
 
RESET - Static variable in interface ij.macro.MacroConstants
 
reset() - Method in class ij.measure.ResultsTable
Clears all the columns and sets the counter to zero.
reset() - Method in class ij.process.ByteProcessor
Reset the image from snapshot.
reset(ImageProcessor) - Method in class ij.process.ByteProcessor
Restore pixels that are within roi but not part of mask.
reset() - Method in class ij.process.ColorProcessor
 
reset(ImageProcessor) - Method in class ij.process.ColorProcessor
 
reset() - Method in class ij.process.FloatProcessor
 
reset(ImageProcessor) - Method in class ij.process.FloatProcessor
 
reset() - Method in class ij.process.ImageProcessor
Restores the pixel data from the snapshot (undo) buffer.
reset(ImageProcessor) - Method in class ij.process.ImageProcessor
Restores pixels from the snapshot buffer that are within the rectangular roi but not part of the mask.
reset() - Method in class ij.process.ShortProcessor
 
reset(ImageProcessor) - Method in class ij.process.ShortProcessor
 
reset() - Static method in class ij.Undo
 
reset() - Method in class ij.util.CharIndexedSegment
 
RESET_MIN_MAX - Static variable in interface ij.macro.MacroConstants
 
RESET_THRESHOLD - Static variable in interface ij.macro.MacroConstants
 
resetBinaryThreshold() - Method in class ij.process.ImageProcessor
Resets the threshold if minThreshold=maxThreshold and lutUpdateMode=NO_LUT_UPDATE.
resetClipboard() - Static method in class ij.ImagePlus
Clears the internal clipboard.
resetColor(Color) - Method in class ij2x.plugin.HorizontalGradient
 
resetCounter() - Static method in class ij.plugin.filter.Analyzer
Sets the measurement counter to zero.
resetCounter - Variable in class ij.plugin.filter.ParticleAnalyzer
 
resetDisplayRange() - Method in class ij.CompositeImage
 
resetDisplayRange() - Method in class ij.ImagePlus
 
resetDisplayRanges() - Method in class ij.CompositeImage
 
resetDoubleBuffer() - Method in class ij.gui.ImageCanvas
 
resetEscape() - Static method in class ij.IJ
This method sets the Esc key to the "up" position.
resetMinAndMax() - Static method in class ij.IJ
Resets the minimum and maximum displayed pixel values of the current image to be the same as the min and max pixel values.
resetMinAndMax(ImagePlus) - Static method in class ij.IJ
Resets the minimum and maximum displayed pixel values of the specified image to be the same as the min and max pixel values.
resetMinAndMax() - Method in class ij.process.ByteProcessor
Resets this image's LUT.
resetMinAndMax() - Method in class ij.process.FloatProcessor
Recalculates the min and max values used to scale pixel values to 0-255 for display.
resetMinAndMax() - Method in class ij.process.ImageProcessor
For short and float images, recalculates the min and max image values needed to correctly display the image.
resetMinAndMax() - Method in class ij.process.ShortProcessor
Recalculates the min and max values used to scale pixel values to 0-255 for display.
resetOutOfRoi(ImageProcessor, int) - Static method in class ij.plugin.filter.GaussianBlur
Set the processed pixels above and below the roi rectangle back to their previous value (i.e., snapshot buffer).
resetProperty(String) - Method in class ij.plugin.frame.jedit.PropertyManager
 
resetRoi() - Method in class ij.process.ImageProcessor
Sets the ROI (Region of Interest) and clipping rectangle to the entire image.
resetSelection() - Method in class ij.text.TextPanel
Clears the selection, if any.
resetStack() - Method in class ij.ImagePlus
 
resetThreshold() - Static method in class ij.IJ
Disables thresholding on the current image.
resetThreshold(ImagePlus) - Static method in class ij.IJ
Disables thresholding on the specified image.
resetThreshold() - Method in class ij.process.ImageProcessor
Disables thresholding.
resetUndoManager() - Method in class ij.plugin.frame.Editor
Resets the undo manager.
resetUndoManager() - Method in class ij2x.plugin.frame.Editor
Resets the undo manager.
resetUndoManager() - Method in class ij2x.plugin.frame.MonoEditor
Resets the undo manager.
resize(int, int) - Method in class ij.process.ByteProcessor
Creates a new ByteProcessor containing a scaled copy of this image or selection.
resize(int, int) - Method in class ij.process.ColorProcessor
Creates a new ColorProcessor containing a scaled copy of this image or selection.
resize(int, int) - Method in class ij.process.FloatProcessor
Creates a new FloatProcessor containing a scaled copy of this image or selection.
resize(int, int) - Method in class ij.process.ImageProcessor
Creates a new ImageProcessor containing a scaled copy of this image or ROI.
resize(int) - Method in class ij.process.ImageProcessor
Creates a new ImageProcessor containing a scaled copy of this image or ROI, with the aspect ratio maintained.
resize(int, int, boolean) - Method in class ij.process.ImageProcessor
Creates a new ImageProcessor containing a scaled copy of this image or ROI.
resize(int, int) - Method in class ij.process.ShortProcessor
Creates a new ShortProcessor containing a scaled copy of this image or selection.
resize(int, int) - Method in class ij.process.StackProcessor
Creates a new stack with dimensions 'newWidth' x 'newHeight'.
resize(int, int, boolean) - Method in class ij.process.StackProcessor
 
resizeCanButton - Variable in class ij2x.plugin.AdjustPanel
 
resizeCanButton - Variable in class ij2x.plugin.ToolbarBoxControl
 
Resizer - Class in ij.plugin.filter
Deprecated. replaced by ij.plugin.Resizer
Resizer() - Constructor for class ij.plugin.filter.Resizer
Deprecated.  
Resizer - Class in ij.plugin
This plugin implements the Edit/Crop and Image/Adjust/Size commands.
Resizer() - Constructor for class ij.plugin.Resizer
 
RESIZING - Static variable in class ij.gui.Roi
 
reslice(ImagePlus) - Method in class ij.plugin.Slicer
 
RESOLUTION_UNIT - Static variable in class ij.io.TiffDecoder
 
resolveEntity(String, String) - Method in class com.microstar.xml.HandlerBase
Resolve an external entity.
resolveEntity(String, String) - Method in interface com.microstar.xml.XmlHandler
Resolve an External Entity.
resolveEntity(String, String) - Method in class ij.plugin.frame.jedit.ModeCatalogHandler
 
resolveEntity(String, String) - Method in class ij.plugin.frame.jedit.syntax.XModeHandler
 
resolveImports() - Method in class ij.plugin.frame.jedit.syntax.ParserRuleSet
Resolves all rulesets added with ParserRuleSet.addRuleSet(ParserRuleSet).
resolveSymlinks(String) - Static method in class ij.plugin.frame.jedit.MiscUtilities
Resolves any symbolic links in the path name specified using File.getCanonicalPath().
resources - Static variable in class ij2x.plugin.CollapsiblePane
 
RESTORE_PREVIOUS_TOOL - Static variable in interface ij.macro.MacroConstants
 
RESTORE_SETTINGS - Static variable in interface ij.macro.MacroConstants
 
restorePreviousTool() - Method in class ij.gui.Toolbar
 
restoreRoi() - Method in class ij.ImagePlus
 
ResultsTable - Class in ij.measure
This is a table for storing measurement results as columns of numeric values.
ResultsTable() - Constructor for class ij.measure.ResultsTable
Constructs an empty ResultsTable with the counter=0 and no columns.
RESyntax - Class in gnu.regexp
An RESyntax specifies the way a regular expression will be compiled.
RESyntax() - Constructor for class gnu.regexp.RESyntax
Construct a new syntax object with all bits turned off.
RESyntax(RESyntax) - Constructor for class gnu.regexp.RESyntax
Construct a new syntax object with all bits set the same as the other syntax.
RETURN - Static variable in interface ij.macro.MacroConstants
 
revButton - Variable in class ij2x.plugin.MovieControllerPanel
 
revButton - Variable in class ij2x.plugin.StackControlPanel
 
revButton - Variable in class ij2x.plugin.TransformPanel
 
reversButton - Variable in class ij2x.plugin.StackControlPanel
 
reverseStack(ImageStack, ImagePlus) - Method in class ij2x.plugin.StackReverser
Returns a stack with that has the order of the slices in 'stack' reversed.
revert() - Method in class ij.ImagePlus
Implements the File/Revert command.
revertButton - Variable in class ij2x.plugin.AlignRGB
 
revertToSaved(ImagePlus) - Method in class ij.io.FileOpener
Restores original disk or network version of image.
RGB - Static variable in class ij.gui.NewImage
 
RGB - Static variable in class ij.io.FileInfo
24-bit interleaved RGB.
rgb - Variable in class ij.process.FHT
Used by the FFT class.
RGB48 - Static variable in class ij.io.FileInfo
48-bit interleaved RGB.
RGB48_PLANAR - Static variable in class ij.io.FileInfo
48-bit planar RGB.
rgb8Button - Variable in class ij2x.plugin.ImageTypePanel
 
rgb8CheckBox - Static variable in class ij2x.plugin.ImageTypePanel
 
RGB_DILATE - Static variable in class ij.process.ColorProcessor
 
RGB_ERODE - Static variable in class ij.process.ColorProcessor
 
RGB_FIND_EDGES - Static variable in class ij.process.ColorProcessor
 
RGB_MEDIAN - Static variable in class ij.process.ColorProcessor
 
RGB_NOISE - Static variable in class ij.process.ColorProcessor
 
RGB_PLANAR - Static variable in class ij.io.FileInfo
24-bit planer RGB.
RGB_RESIZE - Static variable in class ij.process.ColorProcessor
 
RGB_ROTATE - Static variable in class ij.process.ColorProcessor
 
RGB_SCALE - Static variable in class ij.process.ColorProcessor
 
RGB_THRESHOLD - Static variable in class ij.process.ColorProcessor
 
RGB_TRANSLATE - Static variable in class ij.process.ColorProcessor
 
rgbButton - Variable in class ij2x.plugin.ImageTypePanel
 
rgbButton - Variable in class ij2x.plugin.LutPanel
 
rgbCheckBox - Static variable in class ij2x.plugin.ImageTypePanel
 
RGBStackConverter - Class in ij.plugin
Converts a 2 or 3 slice stack, or a hyperstack, to RGB.
RGBStackConverter() - Constructor for class ij.plugin.RGBStackConverter
 
RGBStackItem - Static variable in class ij.Menus
 
RGBStackMerge - Class in ij.plugin
 
RGBStackMerge() - Constructor for class ij.plugin.RGBStackMerge
 
RGBStackSplitter - Class in ij.plugin.filter
Splits an RGB image or stack into three 8-bit grayscale images or stacks.
RGBStackSplitter() - Constructor for class ij.plugin.filter.RGBStackSplitter
 
RGBtoLab() - Static method in class ij.plugin.frame.ColorThresholder
Converts the current image from RGB to CIE L*a*b* and stores the results in the same RGB image R=L*, G=a*, B=b*.
RGBtoYUV() - Static method in class ij.plugin.frame.ColorThresholder
Converts the current image from RGB to YUV and stores the results in the same RGB image R=Y, G=U, B=V.
rgbX - Variable in class ij2x.plugin.AlignRGB
 
rgbXY - Variable in class ij2x.plugin.AlignRGB
 
rgbXYM - Variable in class ij2x.plugin.AlignRGB
 
rgbY - Variable in class ij2x.plugin.AlignRGB
 
rh - Variable in class ij.process.ImageStatistics
 
RIGHT - Static variable in class ij.gui.TextRoi
 
RIGHT - Static variable in class ij.io.RoiDecoder
 
RIGHT - Static variable in class ij.plugin.frame.jedit.JEditTextArea
 
RIGHT_JUSTIFY - Static variable in class ij.process.ImageProcessor
Right justify text.
RIGHT_MARGIN - Static variable in class ij.gui.Plot
the margin width right of the plot frame
rightButton - Variable in class ij2x.plugin.AlignRGB
 
rightButton - Variable in class ij2x.plugin.CollapsiblePane
 
rLUT1 - Variable in class ij.process.ImageProcessor
 
rLUT2 - Variable in class ij.process.ImageProcessor
 
RODBARD - Static variable in class ij.measure.Calibration
 
RODBARD - Static variable in class ij.measure.CurveFitter
 
RODBARD2 - Static variable in class ij.measure.Calibration
 
RODBARD2 - Static variable in class ij.measure.CurveFitter
 
Roi - Class in ij.gui
A rectangular region of interest and superclass for the other ROI classes.
Roi(int, int, int, int) - Constructor for class ij.gui.Roi
Creates a new rectangular Roi.
Roi(int, int, int, int, int) - Constructor for class ij.gui.Roi
Creates a new rounded rectangular Roi.
Roi(Rectangle) - Constructor for class ij.gui.Roi
Creates a new rectangular Roi.
Roi(int, int, ImagePlus) - Constructor for class ij.gui.Roi
Starts the process of creating a user-defined rectangular Roi, where sx and sy are the starting screen coordinates.
Roi(int, int, ImagePlus, int) - Constructor for class ij.gui.Roi
Starts the process of creating a user-defined rectangular Roi, where sx and sy are the starting screen coordinates.
Roi(int, int, int, int, ImagePlus) - Constructor for class ij.gui.Roi
Deprecated.  
roi - Variable in class ij.ImagePlus
 
roi - Variable in class ij.io.FileInfo
 
ROI - Static variable in class ij.io.Opener
 
roi - Variable in class ij2x.plugin.AlignRGB
 
ROI_HEIGHT - Static variable in class ij.measure.ResultsTable
 
ROI_MANAGER - Static variable in interface ij.macro.MacroConstants
 
ROI_MASKS - Static variable in class ij.plugin.filter.ParticleAnalyzer
 
ROI_REQUIRED - Static variable in interface ij.plugin.filter.PlugInFilter
Set this flag if the filter requires an ROI.
ROI_WIDTH - Static variable in class ij.measure.ResultsTable
 
ROI_X - Static variable in class ij.measure.ResultsTable
 
ROI_Y - Static variable in class ij.measure.ResultsTable
 
ROIColor - Static variable in class ij.gui.Roi
 
ROICOLOR - Static variable in class ij.Prefs
 
roicolorButton - Variable in class ij2x.plugin.ControlBarPanel
 
RoiDecoder - Class in ij.io
Decodes an ImageJ, NIH Image or Scion Image ROI file.
RoiDecoder(String) - Constructor for class ij.io.RoiDecoder
Constructs an RoiDecoder using a file path.
RoiDecoder(byte[], String) - Constructor for class ij.io.RoiDecoder
Constructs an RoiDecoder using a byte array.
RoiEncoder - Class in ij.io
Saves an ROI to a file or stream.
RoiEncoder(String) - Constructor for class ij.io.RoiEncoder
Creates an RoiEncoder using the specified path.
RoiEncoder(OutputStream) - Constructor for class ij.io.RoiEncoder
Creates an RoiEncoder using the specified OutputStream.
roiHeight - Variable in class ij.process.ImageProcessor
 
roiHeight - Variable in class ij.process.ImageStatistics
 
RoiManager - Class in ij.plugin.frame
This plugin implements the Analyze/Tools/ROI Manager command.
RoiManager() - Constructor for class ij.plugin.frame.RoiManager
 
RoiManager(boolean) - Constructor for class ij.plugin.frame.RoiManager
 
RoiManager0 - Class in ij.plugin.frame
This plugin implements the Analyze/Tools/ROI Manager command.
RoiManager0() - Constructor for class ij.plugin.frame.RoiManager0
 
RoiManager0(boolean) - Constructor for class ij.plugin.frame.RoiManager0
 
RoiProperties - Class in ij.gui
Displays a dialog that allows the user to specify ROI properties such as color and line width.
RoiProperties(String, Roi) - Constructor for class ij.gui.RoiProperties
Constructs a ColorChooser using the specified title and initial color.
RoiReader - Class in ij.plugin
Opens ImageJ, NIH Image and Scion Image for windows ROI outlines.
RoiReader() - Constructor for class ij.plugin.RoiReader
 
RoiRotator - Class in ij2x.plugin
This plugin implements the Image/Rotate/Arbitrarily command.
RoiRotator() - Constructor for class ij2x.plugin.RoiRotator
 
roiWidth - Variable in class ij.process.ImageProcessor
 
roiWidth - Variable in class ij.process.ImageStatistics
 
RoiWriter - Class in ij.plugin.filter
Saves the current ROI outline to a file.
RoiWriter() - Constructor for class ij.plugin.filter.RoiWriter
 
roiX - Variable in class ij.process.ImageProcessor
 
roiX - Variable in class ij.process.ImageStatistics
 
roiY - Variable in class ij.process.ImageProcessor
 
roiY - Variable in class ij.process.ImageStatistics
 
rollingBallBackground(ImageProcessor, double, boolean, boolean, boolean, boolean, boolean) - Method in class ij.plugin.filter.BackgroundSubtracter
Create or subtract a background, works for all image types.
rollingBallBrightnessBackground(ColorProcessor, double, boolean, boolean, boolean, boolean, boolean) - Method in class ij.plugin.filter.BackgroundSubtracter
Create or subtract a background, based on the brightness of an RGB image (keeping the hue of each pixel unchanged)
rotate(double) - Method in class ij.process.ByteProcessor
Rotates the image or ROI 'angle' degrees clockwise.
rotate(double) - Method in class ij.process.ColorProcessor
Rotates the image or ROI 'angle' degrees clockwise.
rotate(double) - Method in class ij.process.FloatProcessor
Rotates the image or ROI 'angle' degrees clockwise.
rotate(double) - Method in class ij.process.ImageProcessor
Rotates the image or selection 'angle' degrees clockwise.
rotate(double) - Method in class ij.process.ShortProcessor
Rotates the image or ROI 'angle' degrees clockwise.
RotateAll - Class in ij2x.plugin.filter
This plugin implements the Image/Rotate/Arbitrarily command.
RotateAll() - Constructor for class ij2x.plugin.filter.RotateAll
 
RotateAll - Class in ij2x.plugin
This plugin implements the Image/Rotate/Arbitrarily command.
RotateAll() - Constructor for class ij2x.plugin.RotateAll
 
rotateButton - Variable in class ij2x.plugin.ControlBarPanel
 
rotateLeft() - Method in class ij.process.ImageProcessor
Rotates the entire image 90 degrees counter-clockwise.
rotateLeft() - Method in class ij.process.StackProcessor
 
rotateLine(ImagePlus, int) - Method in class ij.plugin.Straightener
 
rotateRight() - Method in class ij.process.ImageProcessor
Rotates the entire image 90 degrees clockwise.
rotateRight() - Method in class ij.process.StackProcessor
 
rotateYZ - Static variable in class ij.Prefs
Rotate YZ orthogonal views 90 degrees
Rotator - Class in ij.plugin.filter
This plugin implements the Image/Rotate/Arbitrarily command.
Rotator() - Constructor for class ij.plugin.filter.Rotator
 
rotButton - Variable in class ij2x.plugin.TransformPanel
 
rotLeftButton - Variable in class ij2x.plugin.TransformPanel
 
rotRightButton - Variable in class ij2x.plugin.TransformPanel
 
rotRoiButton - Variable in class ij2x.plugin.TransformPanel
 
ROUND - Static variable in interface ij.macro.MacroConstants
 
ROUNDED_RECT_ARC_SIZE - Static variable in class ij.io.RoiDecoder
 
ROUNDNESS - Static variable in class ij.measure.ResultsTable
 
row - Variable in class ij.plugin.frame.Editor
 
rowIndex(int) - Method in class ij.text.TextPanel
Converts a y coordinate in pixels into a row index.
rows - Variable in class ij.plugin.frame.jedit.LNTextAreaDefaults
 
rows - Variable in class ij.plugin.frame.jedit.LNTextAreaPainter
 
rows - Variable in class ij.plugin.frame.jedit.TextAreaDefaults
 
rows - Variable in class ij.plugin.frame.jedit.TextAreaPainter
 
ROWS_PER_STRIP - Static variable in class ij.io.TiffDecoder
 
rowsPerStrip - Variable in class ij.io.FileInfo
 
RSURL - Static variable in class ij.IJ
 
rt - Variable in class ij.plugin.filter.ParticleAnalyzer
 
rules - Variable in class ij.plugin.frame.jedit.syntax.Token
The rule set of this token.
rules - Variable in class ij.plugin.frame.jedit.syntax.TokenMarker.LineContext
 
run() - Method in class ij.Executer
 
run() - Method in class ij.gui.StackWindow
 
run(String) - Method in class ij.gui.ToolBox
 
run(String) - Static method in class ij.IJ
Runs an ImageJ command.
run(String, String) - Static method in class ij.IJ
Runs an ImageJ command, with options that are passed to the GenericDialog and OpenDialog classes.
run(ImagePlus, String, String) - Static method in class ij.IJ
Runs an ImageJ command using the specified image and options.
run() - Method in class ij.ImageJ
Quit using a separate thread, hopefully avoiding thread deadlocks.
RUN - Static variable in class ij.macro.Interpreter
 
run(String) - Method in class ij.macro.Interpreter
Interprets the specified string.
run(String, String) - Method in class ij.macro.Interpreter
Runs the specified macro, passing it a string argument and returning a string value.
run(Program) - Method in class ij.macro.Interpreter
Interprets the specified tokenized macro file starting at location 0.
run(int) - Method in class ij.macro.Interpreter
Runs an existing macro starting at the specified program counter location.
RUN - Static variable in interface ij.macro.MacroConstants
 
run() - Method in class ij.macro.MacroRunner
 
run(String) - Method in class ij.plugin.AboutBox
 
run(String) - Method in class ij.plugin.AboutBox1
 
run(String) - Method in class ij.plugin.AboutBox2
 
run(String) - Method in class ij.plugin.Animator
Set 'arg' to "set" to display a dialog that allows the user to specify the animation speed.
run(String) - Method in class ij.plugin.ArrowToolOptions
 
run(String) - Method in class ij.plugin.AVI_Reader
The plugin is invoked by ImageJ using this method.
run(String) - Method in class ij.plugin.BatchConverter
 
run(String) - Method in class ij.plugin.BatchMeasure
 
run(String) - Method in class ij.plugin.BatchProcesser
 
run() - Method in class ij.plugin.BatchProcesser
 
run(String) - Method in class ij.plugin.BMP_Reader
 
run(String) - Method in class ij.plugin.BMP_Writer
 
run(String) - Method in class ij.plugin.BrowserLauncher
Opens the specified URL (default is the ImageJ home page).
run(String) - Method in class ij.plugin.CanvasResizer
 
run(String) - Method in class ij.plugin.ClassChecker
 
run(String) - Method in class ij.plugin.Clipboard
 
run(String) - Method in class ij.plugin.Colors
 
run(String) - Method in class ij.plugin.CommandFinder
 
run(String) - Method in class ij.plugin.CommandLister
 
run(String) - Method in class ij.plugin.Commands
 
run(String) - Method in class ij.plugin.Compiler
 
run(String) - Method in class ij.plugin.CompositeConverter
 
run(String) - Method in class ij.plugin.Concatenator
 
run(String) - Method in class ij.plugin.ContrastEnhancer
 
run(String) - Method in class ij.plugin.ControlPanel
Creates a panel with the hierarchical tree structure of ImageJ's commands.
run(String) - Method in class ij.plugin.Converter
 
run(String) - Method in class ij.plugin.DICOM
 
run(String) - Method in class ij.plugin.Distribution
 
run(String) - Method in class ij.plugin.DragAndDrop
 
run() - Method in class ij.plugin.DragAndDrop
 
run(String) - Method in class ij.plugin.Duplicator
 
run(ImagePlus) - Method in class ij.plugin.Duplicator
Returns a copy of the image, stack or hyperstack contained in the specified ImagePlus.
run(ImagePlus, int, int) - Method in class ij.plugin.Duplicator
Returns a new stack containing a subrange of the specified stack.
run(ImagePlus, int, int, int, int, int, int) - Method in class ij.plugin.Duplicator
Returns a new hyperstack containing a possibly reduced version of the input image.
run(String) - Method in class ij.plugin.EventListener
 
run(String) - Method in class ij.plugin.FFT
 
run(String) - Method in class ij.plugin.FFTMath
 
run(String) - Method in class ij.plugin.FileInfoVirtualStack
 
run(ImageProcessor) - Method in class ij.plugin.filter.Analyzer
 
run(ImageProcessor) - Method in class ij.plugin.filter.AVI_Writer
Asks for the compression type and filename; then saves as AVI file
run(ImageProcessor) - Method in class ij.plugin.filter.BackgroundSubtracter
Background for any image type
run(ImageProcessor) - Method in class ij.plugin.filter.Benchmark
 
run(ImageProcessor) - Method in class ij.plugin.filter.Binary
 
run(ImageProcessor) - Method in class ij.plugin.filter.CalibrationBar
 
run(ImageProcessor) - Method in class ij.plugin.filter.Calibrator
 
run(ImageProcessor) - Method in class ij.plugin.filter.Convolver
 
run(ImageProcessor) - Method in class ij.plugin.filter.Duplicater
Deprecated.  
run(ImageProcessor) - Method in class ij.plugin.filter.EDM
Called by the PlugInFilterRunner to process the image or one frame of a stack
run(ImageProcessor) - Method in class ij.plugin.filter.FFTCustomFilter
 
run(ImageProcessor) - Method in class ij.plugin.filter.FFTFilter
 
run(ImageProcessor) - Method in class ij.plugin.filter.Filler
 
run(ImageProcessor) - Method in class ij.plugin.filter.Filters
 
run(ImageProcessor) - Method in class ij.plugin.filter.FractalBoxCounter
 
run(ImageProcessor) - Method in class ij.plugin.filter.GaussianBlur
This method is invoked for each slice during execution
run(ImageProcessor) - Method in class ij.plugin.filter.ImageMath
 
run(ImageProcessor) - Method in class ij.plugin.filter.ImageProperties
 
run(ImageProcessor) - Method in class ij.plugin.filter.Info
 
run(ImageProcessor) - Method in class ij.plugin.filter.LineGraphAnalyzer
 
run(ImageProcessor) - Method in class ij.plugin.filter.LutApplier
 
run(ImageProcessor) - Method in class ij.plugin.filter.LutViewer
 
run(ImageProcessor) - Method in class ij.plugin.filter.MaximumFinder
The plugin is inferred from ImageJ by this method
run(ImageProcessor) - Method in class ij.plugin.filter.ParticleAnalyzer
 
run(ImageProcessor) - Method in interface ij.plugin.filter.PlugInFilter
Filters use this method to process the image.
run() - Method in class ij.plugin.filter.PlugInFilterRunner
The dispatcher for the background threads
run(ImageProcessor) - Method in class ij.plugin.filter.Printer
 
run(ImageProcessor) - Method in class ij.plugin.filter.Profiler
 
run(ImageProcessor) - Method in class ij.plugin.filter.RankFilters
 
run(ImageProcessor) - Method in class ij.plugin.filter.Resizer
Deprecated.  
run(ImageProcessor) - Method in class ij.plugin.filter.RGBStackSplitter
 
run(ImageProcessor) - Method in class ij.plugin.filter.RoiWriter
 
run(ImageProcessor) - Method in class ij.plugin.filter.Rotator
 
run(ImageProcessor) - Method in class ij.plugin.filter.SaltAndPepper
 
run(ImageProcessor) - Method in class ij.plugin.filter.ScaleDialog
 
run(ImageProcessor) - Method in class ij.plugin.filter.Shadows
 
run(ImageProcessor) - Method in class ij.plugin.filter.StackLabeler
 
run(ImageProcessor) - Method in class ij.plugin.filter.ThresholdToSelection
 
run(ImagePlus) - Static method in class ij.plugin.filter.ThresholdToSelection
 
run(ImageProcessor) - Method in class ij.plugin.filter.Transformer
 
run(ImageProcessor) - Method in class ij.plugin.filter.Translator
 
run(ImageProcessor) - Method in class ij.plugin.filter.UnsharpMask
This method is invoked for each slice or color channel.
run(ImageProcessor) - Method in class ij.plugin.filter.Writer
 
run(ImageProcessor) - Method in class ij.plugin.filter.XYWriter
 
run(ImageProcessor) - Method in class ij.plugin.filter.ZAxisProfiler
 
run(String) - Method in class ij.plugin.FITS_Reader
 
run(String) - Method in class ij.plugin.FITS_Writer
 
run(String) - Method in class ij.plugin.FolderOpener
 
run(String) - Method in class ij.plugin.frame.ColorThresholder
 
run() - Method in class ij.plugin.frame.ColorThresholder
 
run(String) - Method in class ij.plugin.frame.ContrastAdjuster
 
run() - Method in class ij.plugin.frame.ContrastAdjuster
 
run(String) - Method in class ij.plugin.frame.Editor
 
run() - Method in class ij.plugin.frame.Editor
 
run() - Method in class ij.plugin.frame.LineWidthAdjuster
 
run(String) - Method in class ij.plugin.frame.MemoryMonitor
 
run(String) - Method in class ij.plugin.frame.PlugInFrame
 
run() - Method in class ij.plugin.frame.ThresholdAdjuster
 
run(String) - Method in class ij.plugin.GelAnalyzer
 
run(String) - Method in class ij.plugin.GifWriter
 
run(String) - Method in class ij.plugin.GroupedZProjector
 
run(String) - Method in class ij.plugin.Histogram
 
run(String) - Method in class ij.plugin.Hotkeys
 
run(String) - Method in class ij.plugin.HyperStackConverter
 
run(String) - Method in class ij.plugin.HyperStackReducer
 
run(String) - Method in class ij.plugin.ImageCalculator
 
run(String, ImagePlus, ImagePlus) - Method in class ij.plugin.ImageCalculator
 
run(String) - Method in class ij.plugin.ImageJ_Updater
 
run(String) - Method in class ij.plugin.ImagesToStack
 
run(String) - Method in class ij.plugin.Installer
 
run(String) - Method in class ij.plugin.JavaProperties
 
run(String) - Method in class ij.plugin.JpegWriter
 
run(String) - Method in class ij.plugin.ListVirtualStack
 
run(String) - Method in class ij.plugin.LUT_Editor
 
run(String) - Method in class ij.plugin.LutLoader
If 'arg'="", displays a file open dialog and opens the specified LUT.
run(String) - Method in class ij.plugin.Macro_Runner
Opens and runs the specified macro file, which is assumed to be in the plugins folder, on the current thread.
run(String) - Method in class ij.plugin.MacroInstaller
 
run(String) - Method in class ij.plugin.MeasurementsWriter
 
run(String) - Method in class ij.plugin.Memory
 
run(String) - Method in class ij.plugin.Memory_Monitor
 
run() - Method in class ij.plugin.Memory_Monitor.Surface
 
run(String) - Method in class ij.plugin.MontageMaker
 
run(String) - Method in class ij.plugin.NewPlugin
 
run(String) - Method in class ij.plugin.NextImageOpener
 
run(String) - Method in class ij.plugin.Options
 
run(String) - Method in class ij.plugin.Orthogonal_Views
 
run(String) - Method in class ij.plugin.OverlayCommands
 
run(String) - Method in class ij.plugin.PGM_Reader
 
run(String) - Method in interface ij.plugin.PlugIn
This method is called when the plugin is loaded.
run(String) - Method in class ij.plugin.PNG_Writer
 
run(String) - Method in class ij.plugin.PNM_Writer
 
run(String) - Method in class ij.plugin.Projector
 
run(String) - Method in class ij.plugin.ProxySettings
 
run(String) - Method in class ij.plugin.Raw
 
run(String) - Method in class ij.plugin.RectToolOptions
 
run(String) - Method in class ij.plugin.Resizer
 
run(String) - Method in class ij.plugin.RGBStackConverter
 
run(String) - Method in class ij.plugin.RGBStackMerge
 
run(String) - Method in class ij.plugin.RoiReader
 
run(String) - Method in class ij.plugin.ScaleBar
 
run(String) - Method in class ij.plugin.Scaler
 
run(String) - Method in class ij.plugin.ScreenGrabber
 
run(String) - Method in class ij.plugin.Selection
 
run(String) - Method in class ij.plugin.SimpleCommands
 
run(String) - Method in class ij.plugin.Slicer
 
run(String) - Method in class ij.plugin.SpecifyROI
 
run(String) - Method in class ij.plugin.StackCombiner
 
run(String) - Method in class ij.plugin.StackEditor
 
run(String) - Method in class ij.plugin.StackInserter
 
run(String) - Method in class ij.plugin.StackMaker
 
run(String) - Method in class ij.plugin.StackReducer
 
run(String) - Method in class ij.plugin.StackReverser
 
run(String) - Method in class ij.plugin.StackWriter
 
run(String) - Method in class ij.plugin.Straightener
 
run(String) - Method in class ij.plugin.SubstackMaker
 
run(String) - Method in class ij.plugin.SurfacePlotter
 
run(String) - Method in class ij.plugin.TextFileReader
 
run(String) - Method in class ij.plugin.TextReader
 
run(String) - Method in class ij.plugin.TextWriter
 
run(String) - Method in class ij.plugin.ThreadLister
 
run(String) - Method in class ij.plugin.Thresholder
 
run(String) - Method in class ij.plugin.Timer
 
run(String) - Method in class ij.plugin.URLOpener
If 'urlOrName' is a URL, opens the image at that URL.
run(String) - Method in class ij.plugin.WandToolOptions
 
run(String) - Method in class ij.plugin.WindowOrganizer
 
run(String) - Method in class ij.plugin.XYCoordinates
 
run(String) - Method in class ij.plugin.Zoom
'arg' must be "in", "out", "100%" or "orig".
run(String) - Method in class ij.plugin.ZProjector
 
run() - Method in class ij.RecentOpener
Open the file and move the path to top of the submenu.
run() - Method in class ij.SocketListener
 
run() - Method in class ij.text.TextPanel
For better performance, open double-clicked files on separate thread instead of on event dispatch thread.
run() - Method in class ij.util.WorkThread
 
run(String) - Method in class ij2x.plugin.AdjustPanel
 
run(String) - Method in class ij2x.plugin.AlignRGB
 
run(String) - Method in class ij2x.plugin.CollapsiblePane
 
run() - Method in class ij2x.plugin.CollapsiblePane
 
run(String) - Method in class ij2x.plugin.Concatenator
 
run(String) - Method in class ij2x.plugin.ControlBarPanel
 
run() - Method in class ij2x.plugin.ControlBarPanel
 
run() - Method in class ij2x.plugin.filter.LutViewer
 
run(ImageProcessor) - Method in class ij2x.plugin.filter.RotateAll
 
run(String) - Method in class ij2x.plugin.frame.Editor
 
run(String) - Method in class ij2x.plugin.frame.JCalendar
 
run() - Method in class ij2x.plugin.frame.JColorPicker
 
run(String) - Method in class ij2x.plugin.frame.MemoryMonitor
 
run(String) - Method in class ij2x.plugin.frame.MonoEditor
 
run(String) - Method in class ij2x.plugin.HorizontalGradient
 
run(String) - Method in class ij2x.plugin.ImageTypePanel
 
run(ImageProcessor) - Method in class ij2x.plugin.Lut2Java
 
run(String) - Method in class ij2x.plugin.LutPanel
 
run(String) - Method in class ij2x.plugin.MathPanel
 
run(String) - Method in class ij2x.plugin.MovieControllerPanel
 
run(String) - Method in class ij2x.plugin.RoiRotator
 
run(ImageProcessor) - Method in class ij2x.plugin.RotateAll
 
run(String) - Method in class ij2x.plugin.ScaleAll
 
run(String) - Method in class ij2x.plugin.StackControlPanel
 
run(String) - Method in class ij2x.plugin.StackInserter
 
run(String) - Method in class ij2x.plugin.StackMaker
 
run(String) - Method in class ij2x.plugin.StackReverser
 
run(String) - Method in class ij2x.plugin.ThreeColor
 
run(String) - Method in class ij2x.plugin.ToolbarBoxControl
 
run(String) - Method in class ij2x.plugin.TransformPanel
 
run(String) - Method in class ij2x.plugin.Translator
 
RUN_MACRO - Static variable in interface ij.macro.MacroConstants
 
RUN_TO_CARET - Static variable in class ij.macro.Interpreter
 
runappAction - Static variable in class ij.plugin.frame.Editor
 
runCommand(String) - Method in class ij.plugin.frame.RoiManager
Executes the ROI Manager "Add", "Add & Draw", "Update", "Delete", "Measure", "Draw", "Show All", Show None", "Fill", "Deselect", "Select All", "Combine", "AND", "XOR", "Split", "Sort" or "Multi Measure" command.
runCommand(String, String) - Method in class ij.plugin.frame.RoiManager
Executes the ROI Manager "Open", "Save" or "Rename" command.
runCommand(String, String, double) - Method in class ij.plugin.frame.RoiManager
Adds the current selection to the ROI Manager, using the specified color (a 6 digit hex string) and line width.
runCommand(String) - Method in class ij.plugin.frame.RoiManager0
Executes the ROI Manager "Add", "Add & Draw", "Update", "Delete", "Measure", "Draw", "Show All", Show None", "Fill", "Deselect", "Select All", "Combine", "AND", "XOR", "Split", "Sort" or "Multi Measure" command.
runCommand(String, String) - Method in class ij.plugin.frame.RoiManager0
Executes the ROI Manager "Open", "Save" or "Rename" command.
runCommand(String, String, double) - Method in class ij.plugin.frame.RoiManager0
Adds the current selection to the ROI Manager, using the specified color (a 6 digit hex string) and line width.
runFilterPlugIn(Object, String, String) - Method in class ij.ImageJ
 
runFromLabel(String) - Method in class ij.macro.FunctionFinder
 
runFromLabel(String) - Method in class ij.plugin.CommandFinder
 
runInteractiveTests(String) - Method in class ij2x.plugin.frame.InteractiveTestCase
Runs all tests whose method names match the specified regex pattern.
runInteractiveTests() - Method in class ij2x.plugin.frame.InteractiveTestCase
Runs all test methods which are prefixed with "interactive".
runJavaScript(String, String) - Method in class ij.plugin.Macro_Runner
Runs a script on the current thread, passing 'arg', which the script can retrieve using the getArgument() function.
runMacro(String) - Static method in class ij.IJ
Runs the macro contained in the string macro.
runMacro(String, String) - Static method in class ij.IJ
Runs the macro contained in the string macro.
runMacro(Program, int, String) - Method in class ij.macro.Interpreter
Interprets the specified tokenized macro starting at the specified location.
runMacro(String, String) - Method in class ij.plugin.Macro_Runner
Opens and runs the specified macro on the current thread.
runMacro(String) - Method in class ij.plugin.MacroInstaller
 
runMacro(String, Editor) - Method in class ij.plugin.MacroInstaller
 
runmacroAction - Static variable in class ij.plugin.frame.Editor
 
runmacroAction - Static variable in class ij2x.plugin.frame.Editor
 
runmacroAction - Static variable in class ij2x.plugin.frame.MonoEditor
 
runMacroCommand(String) - Static method in class ij.plugin.MacroInstaller
 
runMacroFile(String, String) - Static method in class ij.IJ
Runs the specified macro or script file in the current thread.
runMacroFile(String) - Static method in class ij.IJ
Runs the specified macro file.
runMacroFile(String, String) - Method in class ij.plugin.Macro_Runner
Opens and runs the specified macro file on the current thread.
runMacroFromIJJar(String, String) - Method in class ij.plugin.Macro_Runner
 
runMacroFromJar(String, String) - Static method in class ij.plugin.Macro_Runner
Runs the specified macro from a JAR file in the plugins folder, passing it the specified argument.
runMacroShortcut(String) - Static method in class ij.plugin.MacroInstaller
 
runMacroTool(String) - Method in class ij.plugin.MacroInstaller
 
runMenuTool(String, String) - Method in class ij.plugin.MacroInstaller
 
running - Variable in class ij.gui.ImageWindow
This variable is set false if the user presses the escape key or closes the window.
running2 - Variable in class ij.gui.ImageWindow
This variable is set false if the user clicks in this window, presses the escape key, or closes the window.
runPlugIn(ImagePlus, String, String) - Static method in class ij.IJ
Runs the specified plugin using the specified image.
runPlugIn(String, String) - Static method in class ij.IJ
Runs the specified plugin and returns a reference to it.
runShortcut(Program, int, String) - Method in class ij.macro.MacroRunner
Runs tokenized macro on current thread if pgm.queueCommands is true.
runSocketListener - Static variable in class ij.Prefs
Run the SocketListener.
runUserPlugIn(String, String, String, boolean) - Method in class ij.ImageJ
 
rw - Variable in class ij.process.ImageStatistics
 
rx - Variable in class ij.process.ImageStatistics
 
ry - Variable in class ij.process.ImageStatistics
 

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